Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs139981268 chr13:114160732 TG/T 4.56E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs139996278 chr2:61503469 TATAACTTC/T 8.71E-5 174 21.95 30.93 10.3 KM Plot
PCPG rs140036011 chr2:118554034 A/G 1.89E-5 176 25.17 25.97 11.65 KM Plot
PCPG rs140178951 chr14:74569645 CAT/C 2.24E-5 176 25.4 27.43 10.3 KM Plot
PCPG rs140254258 chr7:105164228 G/C 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs140336573 chr11:18145137 G/T 4.13E-6 175 27.23 23.82 6.37 KM Plot
PCPG rs140360353 chr13:54064471 A/AT 0.000258 176 25.47 20.47 3.17 KM Plot
PCPG rs140402520 chr9:136943003 G/A 5.12E-7 176 25.6 21.55 31.47 KM Plot
PCPG rs140444739 chr11:18149711 G/A 4.13E-6 175 27.2 23.53 10.3 KM Plot
PCPG rs140488289 chr12:56687459 T/C 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs1405794 chr3:39756531 G/A 8.3E-8 176 25.87 19.88 19.87 KM Plot
PCPG rs140675793 chr10:69732959 T/TA 0 175 25.87 18.2 2.28 KM Plot
PCPG rs1406780 chr3:80570997 A/G 0.000292 178 27.2 24.77 19.2 KM Plot
PCPG rs140776520 chr16:89817299 TTTGTTG/T 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs140844595 chr2:24318837 G/A 0.000114 177 25.28 27.27 17.43 KM Plot